Microbe Organics

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Microbe Organics? What the heck is this?; You ask. It is the name I chose to describe my approach to the understanding and interpretation of microbial based soil and plant amendments currently evolving in horticultural practices throughout the world. Two such practices which you may have heard of or use yourself are Compost Tea and EM (Effective Microorganisms {EMRO USA} or Beneficial and Effective Microorganisms{SCD}; 2 Brand Names). I will be focusing to begin with on the practical analysis and use of Compost Tea.


I am initiating this website in July of 2007 to coincide with the release of a DVD I produced to assist with the identification microscopically of the major beneficial microbes at work in compost, soil and Compost Tea. I need to make some money to support my work so it will be my primary thrust. More about that later.

I am not an expert in this field of biology, in fact I am a lifelong student and will defer to the far superior overall knowledge of several experts in microbial based amendments, however what I have to offer is a translation or simplification of many of the terms, functions and observations surrounding this science. The reason I am able to do this is mostly due to my ‘I have to see it to believe it or comprehend it’ attitude. When I first started researching microbial based agriculture about six years ago I set up a small microscope laboratory enabling me to observe the microorganisms present in Compost Tea, microbial fermentations (e.g. EM), compost and soil. I set up an interface between a video camera, microscope and computer thus allowing me to capture real time video which has culminated thus far in the production of my first DVD.

Like the science which this growing (pun intended) phenomenon is based upon, this website will evolve over time. I will post links to sources of knowledge, supplies and practical solutions as I acquire permission to do so and as I learn of them. As I gain more skill managing this site I hope to post video footage of observations and experiments. Therefore keep checking back for updates.   

Contents;
Compost Tea
Organic Growing from a Microbial Perspective
DVD                                                                                                                                     Naked  Amoeba
AmoebaWho I am
Microbulator Compost Tea Brewer
Projects
Tests, Observations & Postulations
Resources & Links


What is Compost Tea?


Very simply stated Compost Tea is a water-based environment wherein beneficial microorganisms are extracted from compost or vermicompost (worm compost) and multiplied by the millions and billions. Some form of agitation breaks the microbes free from the compost and they multiply because food, like black strap molasses, fish hydrolysate, kelp meal, humic acid, etc. has been added to the water, which at least one type of microbe digests. When one or more type of microbe begins to multiply in response to the food, other microbes respond to this growth and begin to consume these initial microbes and multiply in turn and so on and so on. For example the initial microbes are usually bacteria which are food for protozoa so the protozoa multiply in response to the bacteria. The end result is a functional feeding cycle or microbial nutrient cycle. I refer to this as a functional microbial consortia. This develops over a period of 12 to 72 hours or more and is then applied to the soil and plants. In the soil there are a number of organisms which function in basically the same nutrient cycle and zone. Once again, simply stated, there are substances released from the roots of plants which feed bacteria (& archaea), again the bacteria/archaea become prey to the protozoa and the protozoa excrete substances with are available to the roots as nutrients (e.g. nitrogen) thus creating a feeding cycle. Other compost/soil microorganisms of great importance are fungi. Fungal hyphae, are long branching strands which grow through the soil and serve to; bind soil aggregates together, help retain moisture, store certain nutrients, provide a source of food to certain other microbes, provide pathways for nutrient and moisture delivery, decompose organic material and displace disease causing fungi. There are also other types of fungi which do not grow (to my knowledge) in compost or Compost Tea which form a direct symbiotic nutrient exchange relationship with roots. This sort of fungi is called mycorrhizal fungi and there are many different species. The major microorganisms at work in Compost Tea are bacteria, protozoa (flagellates, ciliates and amoebae) and fungal hyphae if present in your compost. It is best to have a wide diversity of each of these microbes present. There are higher order organisms like nematodes found in compost and soil and occasionally these are extracted into Compost Tea but they do not grow nor multiply in the tea. Of course in the soil there are many other contributors to the nutrient cycle, like insects, earthworms and other animals. In its totality this is often referred to as the soil food web.

Fungal Hyphae (phase contrast)
fungal hyphae1

 All life is in a symbiotic nutrient cycle even down to  the microorganisms contained in our gut  that assist us  to digest certain foods. Life, consumption,  excrement, death, decomposition,  life. You are what  you eat and the same applies to plants.

 It has been discovered that aerated Compost Tea  helps to ensure the multiplication of mostly  aerobic  microbes which are more desirable in this  application. Plus the aeration provides the  agitation  necessary to dislodge the microbes from the compost. Therefore most Compost  Tea machines or brewers, as they are commonly known, involve the introduction of air into  the water and compost.

 Many Compost Tea users and producers have begun examining their brews with microscopes to see the microbes present. This ensures that they have the desired microbes in the right numbers and diversity prior to applying the tea to soil and plants. I am fairly hopeful if not certain that in the future when someone purchases a Compost Tea brewer that the kit will include a microscope. It is the identification of what is going on in this tiny universe where I find my calling.                                                                                
                                                                                                                                                        Flagellates
flagellates
 
Fungal Hyphae (brightfield)                                                 
 fungal hyphae2

Organic Growing from a Microbial Perspective

To come to a rudimentary understanding of how organic or natural growing really works, one must cast off previous miscomprehensions from the chemical model, that when we fertilize or add compost or other organic matter, we are feeding plants. This is not the case. With true organics one is feeding the microorganisms in the soil which convert organic nutrients into a form which can be assimilated by the roots of plants. According to studies, there are only a very few plant species capable of absorbing only a very few organic nutrients. Most plants are only capable of absorbing inorganic nutrients which are made that way by microbes which live at the root to soil interface, the rhizosphere. So the idea which you have, that you are feeding your plants when they appear to need nitrogen and you feed an organic fertilizer deemed high in nitrogen, is bogus. You are feeding the microbes which feed the plants.

Chemical fertilizers, mostly derived from petroleum are inorganic and can be absorbed by the roots of plants, however they are pollutants, which kill beneficial soil microbes, build up unused residues which run into the water table and, in my opinion, create harmful tissue changes in the plants which humans consume as food and medicine. In addition, I believe, the use of chemical fertilizers promote the incidence of plant pathogens like powdery mildew, erwinia, fusarium, pythium, etc. The grower can end up in a vicious spiraling downward fall as they use one chemical after another to control the effects brought on by the others.

The plant is no passive player in the natural growing game of survival but is the master conductor of this delicately balanced orchestra. The plant receives energy from above the soil in the form of light. This photosynthesis results in the plant’s internal production of carbon. It utilizes this carbon to create and reinforce tissue as it grows, so it is a very valuable commodity. As we all know the plant also requires a form of nitrogen (N) and other macro and micro-nutrients which it receives through the root system. As already stated this N must be in a form which the plant can directly uptake and use, usually a form of ammonia (N). Research has shown that when a plant needs to uptake N from the soil it sends out some of its precious carbon through it’s root system as a feed for bacteria and *archaea which live in the rhizosphere. [* Archaea are prokaryotes indiscernible from bacteria except through specialized testing; usually DNA] There are more complexities involved, such as, that certain plant types attract certain bacteria/archaea types but that is beyond the scope of this portrayal. When the bacterial/archaea population has increased in response to the carbons excreted by the roots, protozoa and bacterial feeding nematodes are attracted to the region, ‘hatch out’ from cysts and eggs respectively and in the case of protozoa multiply rapidly. Protozoa consist of flagellates, amoebae and ciliates. Some protozoa can multiply (divide) every 2 to 4 hours so their numbers can increase in short order. The protozoa and nematodes consume the bacteria/archaea and release, as waste, the ammonia (N) which the roots can then absorb. The multiplication rate of the bacteria/archaea increases in response to this predation and so on. This has been called the microbial loop. Protozoa are particularly good providers as their ‘digestive system’ only utilizes about 30% of the nutrients consumed meaning that roughly 70% is released as the waste which the roots crave. This factor, combined with their short generational time makes them real feeding machines. Undoubtedly there are micronutrients also processed and absorbed in this cycle. There are still many mysteries which research has yet to unfold or are not yet known to this author.

This is not the end. The concert continues. The bacteria/archaea also consume the ammonia (N) which is now bioavailable to them, so are in competition with the plant for these nutrients. Because of this, if there are no predators or insufficient numbers to consume the bacteria/archaea they could potentially lock up the N.  When the plant is growing it is in a vegetative state and requires a large load of available nitrogen (N) so it is advantageous for it to continue this release of carbon and maintain a balance of bacteria/archaea and protozoa, while uptaking just the right amounts of nutrients. Don’t get me wrong. There are other players in this orchestra, either playing subdued roles or waiting their turn to play. There are higher order animals like mites, other microarthropods and worms. There are various forms of fungi, most of which are degraders but some of which are mycorrhizal. These all have roles in breaking down organic matter into a form which can then be mineralized by the plant’s bacteria/archaea team or delivered directly to the roots.

When the plant receives its signal from the upper world, above the soil, that it is time to switch gears and produce flowers and or fruit, its nutrient requirement changes. Although the mechanics are not well known to this author, studies indicate that the plant then increases the uptake of the ammonia (N) (bioavailable nitrogen) and reduces or stops excreting the carbon which feeds the bacteria/archaea. This effectively starves the bacteria/archaea which will react by dying or becoming dormant. This of course results in a similar reaction by the protozoa and bacterial feeding nematode population. The mycorrhizal fungi previously mentioned is then triggered into increased growth and production. Studies have indicated that the transference of bioavailable phosphorus and potassium to the roots occur mainly as a function of arbuscular mycorrhizal fungal hyphae in symbiotic relationship with the roots of the plant. The fungal hyphae (microscopic strands) grow right into the root cells and exchange nutrients. In exchange for carbon, once again released by the plant, the fungal hyphae delivers the required bioavailable nutrients to the root system. The fungal structure derives these nutrients from organic matter and food sources in the soil, some naturally processed by the other players as previously mentioned. It is my hypothesis  that the form of carbon released to stimulate the mycorrhizal activity is of a varied molecular structure from that released to promote the bacteria/archaea population previously discussed, however I have no direct data to substantiate this. There are often different types of bacteria which accompany mycorrhizal fungi, adhering to the fungal hyphae in a symbiotic relationship. It is thought that these bacterial species function to exchange nutrients with the fungi as well as to protect the fungal hyphae from consumption by other microbes and even contribute to the protection of the plant from pathogenic fungi. There are other types of mycorrhizal fungi (ectomycorrhizal) which encapsulate roots rather than entering them but these are mostly associated with trees in the temperate and boreal regions.
So you see it is quite a complex arrangement which the plant conducts or controls and there are many facets which yet remain a mystery.   

How to Apply This to Horticultural Activities

You say, okay so that’s how it works but how do I apply that to my growing situation? The answer is pretty simple really. You need to assure that there is organic matter, mostly in the form of composted plant and animal (manure) substances in or on your soil for a microbial inoculant and food source. Additionally you can add microbial foodstocks such as diluted fish hydrolysate and molasses and kelp meal, alfalfa meal and rock phosphate and other clay and rock powders if available. It is very good to include rock phosphate in your composting process if you are making your own. Rock phosphate in the compost adds a long lasting source of phosphorus for microbes to draw from. At time of planting it is highly beneficial to place some mycorrhizal fungi spores in the hole or on the root system. You can research the best strain of fungi for the plants you are growing and purchase the spores from a number of suppliers. [ http://www.mycorrhizae.com   http://www.fungi.com ] You may also consider seeding companion edible mushrooms which provide a dual benefit of cycling nutrients to your plants and providing your breakfast. You may research this at the fungi.com site. The rest is governed by the plant, as previously discussed, assuming that all the necessary components are available from the organic matter and additional foodstocks provided. In my opinion manipulation of the pH is not a wise practice in natural growing unless dramatic acidity or alkalinity are measured. Soil with a healthy microbial population tends to self regulate the pH. One should disturb the soil as little as possible so as to leave fungal growth and strands intact. I realize this is challenging when growing in containers. I have run trials where wooden bins were constructed (2’x3’x1.5’ deep) where soil was successfully left intact after annual plants were harvested and replanted over several seasons. In between plantings composting worms were introduced to help consume the residual dead roots and plant matter. The worms were later trapped out. Compost tea was applied regularly to boost the soil microbial population. Over time there developed something of a miniature ecosystem complete with mushrooms, rove beetles and other beneficial bugs. If you are growing in smaller containers it is a good idea to provide a high volume of quality compost and or vermicompost at the onset.

Some people grow herbs and edible produce in containers organically. Because this has been practiced extensively utilizing chemical fertilizers, there is a period where growers have flushed the soil with copious amounts of water, the thought being that they are removing the harsh or harmful chemicals from the plant tissues. Too late! Those chemicals are already integrated into what you plan to put on your dinner plate or in your medicinal tea or pipe. At least that’s my opinion. If you have grown your produce naturally allowing the plant to be in control, this flushing routine is not only unnecessary but sort of stupid. Since plants are not able to uptake organic nutrients, what exactly would you be flushing away? You might instead be water logging your soil and roots.

Using Compost Tea

The use of compost tea (CT) is one of the best ways to inoculate your soil with the beneficial microbes you wish to have for optimum health of your plants. It is also good if your supply of compost or vermicompost is limited, as it multiplies those microbes, we have been discussing, by the millions. Remember the protozoa I mentioned earlier? Well you can brew an aerated compost tea specifically to have a large population of protozoa, usually mostly flagellates. If you have a good quality compost or vermicompost, protozoa will already be present, often in a resting cyst. If you have an efficient aerated brewer you can pretty much count on having a high flagellate (protozoa) population combined with bacteria/archaea and fungal hyphae (not mycorrhizal) at 42 to 44 hours brew time (65 to 72 degrees F). If you have a microscope you can examine the CT periodically to be sure that the microbial population is optimum. The use of aerated compost tea also provides the opportunity to manipulate microbial populations for specific purposes by using various recipes and brew times. You may wish to have high bacterial or fungal numbers for pathogen/disease control or have soil or plants that require a higher population of a microbial type. I have a lot to learn yet of fungal species which can grow in compost tea so until I have learned to identify the species occurring I’m cautious about some of the tricks employed to stimulate fungal hyphae growth in compost. Better to count on good quality compost and vermicompost with natural occurring quantities and species of fungi and use known mycorrhizal and mushroom spores in the soil.

As always, I am open to correction or refinement of what I have written.

Salutations,
Tim

Some References; 
Email me if you wish to track down these references.

Protozoa and plant growth:  2003;
the microbial loop in soil revisited;     Michael Bonkowski;
Rhizosphere Ecology Group, Institut für Zoologie, Technische Universität Darmstadt,
Darmstadt, Germany

Soil microbial loop and nutrient uptake by plants:     2006
a test using a coupled C:N model of plant–microbial interactions; Xavier Raynaud; Jean-Christophe Lata; Paul W. Leadley Universite´ Paris-Sud XI, France

The mycorrhiza helper bacteria revisited; 2007 P. Frey-Klett, J. Garbaye and M. Tarkka
Interactions Arbres/Micro-organismes, Champenoux, France;
UFZ-Department of Soil Ecology, Helmholz Centre for Environmental
Research, Halle, Germany

Modern Soil Microbiology; 2nd edition 2007 - Chapter 6 - Protozoa and Other Protista in Soil
Marianne Clarholm, Michael Bonkowski, and Bryan Griffiths


My DVD  dvd set


 I have produced a narrated DVD condensed to 1 hour, 43  minutes from hours and hours of live real  time video  captured through an interface of a Leitz Orthoplan  microscope, a Sony high definition  video camera and a  computer. No film was used in this process. The purpose of  this video is to  assist folks who are using microscopes to  identify the microbes they are observing in their compost,  soil and compost tea.

 It includes some examples of; 1/ what microbes you should  see in a finished compost tea,   
 2/  bacteria, 3/ flagellates, 4/  ciliates, 5/ amoebae (3,4 &5 comprise the three groups of  Protozoa),
 6/ fungal hyphae, 7/ yeast cells,
 8/ nematodes, 9/ rotifers
and 10/ compost examination.

 For those of you without microscopes the DVD offers a  good visual representation of what is going  on in your  Compost Tea and soil.

 The DVD is a set of 2 discs in a case. The cost is $40.00  USD including shipping by mail anywhere  in the USA or  Canada. Quotes will be given for other methods of shipping  or for shipping to other  countries. Wholesale prices are available to distributors. Please email me with your inquiry. Presently  the DVD is available in NTSC format.

 The preferred form of payment is by PayPal. If you are not presently registered with PayPal it is easy,  secure, free and it allows the use of credit cards. I will receive payment immediately and can ship the  DVD right out to you.  If you would prefer to send money by another method please email me at;   thegoodjob@hotmail.com

Click on the following video link (4.7 MB) to download a 'wmv' (Windows Media Video) to your computer. Depending on your download speed it may take a while. It is an example of what sort of footage is included in the DVD.
Video link

NOTE RE VIDEOS; If you are unable to view the videos and have a Windows operating system, you may need to initiate, dowload or update Windows Media Player.

Please email me to place your order. thegoodjob@hotmail.com

More Video Footage; also wmv; click on link to download.
Vorticella (<5 MB)

Who I am

Tim Wilson
 My name is Tim Wilson. I am a self-taught researcher/scientist. I do not  possess a degree but did study a wide  range of courses at university,  some of them post-graduate courses I was allowed into based on my  knowledge  level at the time. Many of you will know me by my  contributions to the Yahoo Compost Tea discussion forum.  Presently I  reside on a 100+ acre farm in the southern interior of British Columbia,  Canada. I am just north of a  dot on the map called Westbridge.


Other Projects
I have designed a new Compost Tea brewer called the Microbulator 50 which is described below.  It is different from other brewers I have seen, in that the water is actively circulated through a pipe while being charged with air and returned to the tank from an elevated position with use of only an air pump. It sustains a higher than average dissolved oxygen level. It works with or without an extraction bag. I am actively designing a smaller version of the Microbulator geared for use by the average homeowner wishing to use natural gardening methods.

I hope to produce more helpful DVDs if this first one goes over well. The next project I have in mind is to create a DVD which instructs microscope use specific to the observation of living microbial samples. It will teach some tricks to enhance the images seen with a basic brightfield compound microscope.

I plan on acquiring a variety of inexpensive compound microscopes to evaluate for usefulness in horticultural oriented microbial observation and interface with computer. The most useful one will be optically enhanced through alterations and with added devices to be sold inexpensively and included with the Microbulator kit. The barrier to accomplishing this is money to purchase the subject scopes.

Please email me if you have questions or comments at;  thegoodjob@hotmail.com


The Microbulator 50;  A 50 (US) gallon compost tea brewer
{Patents pending in Canada & USA on design and method related to all sizes and configurations.}

Video Clips of Operation
Details & Questions
Purchase & Shipping

Ugly But Efficient & Cheap!

Features:
* Active flow-circulation induced by air alone; 6.3 gallons/minute
* Efficient gas exchange system for excellent dissolved oxygen maintenance
* Works with or without an extractor bag (extractor unit included)
* Three different ways to configure apparatus
* Translucent barrel promotes the growth of phototrophic microorganisms
* 3.5 CFM diaphragm air pump with 1 year warranty
* Can be dismantled and cleaned in under 20 minutes
* Sturdy parts used in manufacture
* Glass bonded silica air diffusers
* Operational instruction on CD ROM included
* Inexpensive; $460.00 USD without barrel;  $580.00 USD with 50 gal. barrel
* See it in operation > View the video clips below

See the video clips below for microbial data and basic operation.

Details, Details

I now feel ready and confident to begin taking orders for the 50 Gallon Microbulator compost tea brewer or as I affectionately call it, a microbe extractor and multiplier (bioreactor). One of my largest obstacles in getting to this point was deciding on a price. My goal from the beginning was to provide an affordable, efficient device geared to the small farmer/grower who doesn’t need the fancy looking brewer, just one that works and is easily cleaned. During the end phase of development and testing I discovered that my device would not work in just any shape of tank so I had to include a 50 gallon (US) barrel of the correct dimensions. I decided not to mark up the price of the barrel in my sales price, just covering my costs of purchase and handling. Actually, I have kept my overall mark-up lower than the norm resulting in a price much lower than similar sized commercial brewers. My price with the barrel is $580 and $460 without. People deciding to provide their own container will need to ensure the correct dimensions and may need to drill a couple of holes according to instructions provided.

While visiting Tad Hussey at Keep It Simple Inc. (compost tea brewers) in Seattle, I showed him video footage of the Microbulator 50 operating. He commented that it might be ‘not pretty enough’ for most consumers. When I told him my expected price range he coined the phrase ‘ugly and cheap’. I decided to incorporate that into my sales pitch mantra ‘Ugly but Cheap and Efficient’. After all; the beauty of a John Deere tractor is in the eye of the beholder but as we farmers all know ‘nothing runs like Deere’.

The Microbulator 50 works with or without an extractor bag. That decision is the owner’s, based on the planned uses, application method and coarseness of the compost used.

Now, how does this work and what makes it different than other commercial brewers on the market?

My design, unlike other commercial brewers I have seen does not just blow air into water or into the extractor bag but actively circulates the water while charging it with oxygen. This is done using only an air pump. No water pump is involved. This is accomplished by a diffuser housing fixture I designed and built which incorporates the diffuser inside an 1 ½  inch PVC pipe. The whole 50 gallons of water is cycled through this pipe every 8 minutes at a measured flow rate of at least 6.3 gallons per minute. The water is drawn from two opposing sides of the bottom of the tank, pushed past the diffuser, while being injected with O2, up the pipe and through the return nozzle suspended about 2 to 5 inches above the water’s surface, falling back into the liquid, pushing O2 into the water by breaking the surface tension barrier, facilitating the release of CO2 from the tank and the absorption of O2 (gas exchange). This is not unlike the action of a waterfall or flow form. This action pushes the oxygenated water into the body of water further raising the dissolved oxygen content. Because the water intake openings are located at opposing sides at the bottom of the barrel, a current-like flow is created and maintained so any still areas of water are highly unlikely. The release of CO2 is essential to create space in water for the absorption of dissolved oxygen and the only way for CO2 to be released in a CT brewer is through the surface. At the same time a 12 X 1 ½ X 1 ½ inch diffuser is infusing the whole body of water with air.  Oxygen is absorbed by the interface of the tiny bubbles created on the way to the surface and the surface tension barrier is broken again by the bubble turbulence, allowing the further release of carbon dioxide and the maintenance of dissolved oxygen. By this means there are three interfaces where O2 is being injected into the water or compost tea.

This highly efficient yet very simple method is generally able to raise and maintain the dissolved oxygen (DO2) content of fresh well water having a TDS/EC of 21 PPM and temperature of 18 C to 21 C (65 F – 70 F) at least 3 PPM (parts per million) above the natural DO2. Using the same water within the same temperature range, with; 4% compost/vermicompost, 0.75% black strap molasses, 0.25% kelp meal and 0.063% fish hydrolysate, the DO2 is maintained at 8.8 to 9.8 PPM up to a 48 hour brew time.

The circulating action, the force of impact with the water’s surface along with the air from diffusers provides sufficient agitation to break the microbes loose from their binding spots in the compost. The continuous flow provides a more homogenous dispersal of oxygen and microbes avoiding still water areas where potential undesired microbial life may develop. Once free swimming or bound to smaller particles, the bacteria, archaea, yeast cells and fungal hyphae graze on the feed supplied and multiply.

Maintaining a reasonably high rate of dissolved oxygen in the body of water is essential to the device’s efficiency for extracting and multiplying the beneficial aerobic microbes, consisting of; archaea, bacteria, fungal hyphae, flagellates, amoebae, some ciliates, yeast cells and yeast fungal hyphae. Because of the constant cycling, microbes are fairly evenly distributed throughout the tank. To get a sample, simply hold a container under the return nozzle.

With Extractor Unit;
The Microbulator can be used in free suspension or with a mesh extractor bag in two different configurations; one with oxygenated water being circulated through the bag, being ultra quiet and good for a bacteria/archaea disease suppressing formula or a nutrient cycling compost tea (CT) with bacteria/archaea and protozoa; the other with the large diffuser in the bag and the circulating water breaking the surface tension, being good for multi-purpose but especially good if you wish to use an extractor but still have a high fungal volume along with the other microbes. The extractor should be used if you are using coarse compost with pieces between 1/2 inch and 1 inch cubed. See the demo video below.

The highest microbial numbers are going to be developed using the device configured for the compost placed in free suspension but if one requires the extractor for a reduction in particulate matter the other configurations provide a comparative alternative.

On the farm we usually use the Microbulator 50 without the extractor, remove the apparatus once the brew is complete, allowing the particles to settle to the bottom, lower in a submersible pump just above the level of the spent compost/particles and pump out the clearer compost tea. Alternatively one can place the pump in a mesh bag (fly screen size) and drop it in or simply scoop out the compost tea with a pail or watering can. Afterwards dump out the thick leftover slurry onto your soil or compost pile. If you are using vermicompost any worm eggs/capsules/cases remaining will still hatch once in the soil or in a non-hot compost pile.

What did you use and why?

Pump: I settled on the Eco Plus Commercial diaphragm operated air pump. I was first using the Hailea 9730 (rated at 60 LPM) but the air flow was just not strong enough to support 50 gallons of compost tea and it is only warrantied for 6 months. The Eco Plus puts out a whopping 3.4 to 3.6 CFM (<>100 LPM) configured the way we use it. The flow on each pump is tested with our flow meter prior to being shipped. On top of this the pump is warrantied for one year and replacement parts are available if it does quit. It is a little noisier (the price of power) and because it is lighter it wants to vibrate around. To cease the wandering and help with the noise I’ve included a little rubber damper mat with each kit.
IMPORTANT NOTE: I did not use a check valve for the pump because it prohibits air flow so the pump must be placed above or at the same level of the water surface to prevent back flow if there is a power outage or the pump is turned off.

The Air Tubing; The air tubing is heavy duty 7/8 inch braid reinforced clear vinyl. I tried the regular clear stuff but it kinked too much and wore quickly. Each kit includes enough tubing for the device to insert into the barrel plus 6 feet for lead to the pump. You can decide where to place the pump and trim the excess accordingly. Remember the pump must be above or at the same level of the water surface.

Clamps: I used vinyl clamps as they are tough, reusable, easier to clean and non-corrosive. They hold the tubing in place on the fittings but allow the tubing to turn. This can be considered an advantage for positioning the control valve and large diffuser. I have solid stainless steel clamps available for those who may prefer these.

Air Control Valve; I used a brass plumbing valve to control the air flow between the large diffuser and return flow nozzle. I tried cheaper plastic valves but they didn’t cut it.

Piping; I decided on PVC pipe because it is inexpensive, easy to clean, can be fitted together without glue in low pressure applications like this or can be glued when necessary (as are a few of the pieces). I am using 1 ¼ inch diameter pipe because it is the right size to accommodate the flow needed for the 50 gallon brewer. One small disadvantage is that sometimes when disassembling one must use pliers or vice grips to pull apart a pipe and fitting. NOTE; The industry sizing of the pipe is 1 1/4 inch but the actual diameter is 1 1/2 inches.

Diffusers; I consulted with engineers in the aquaculture industry concerning the best type of diffusers to use for  the maximum gas exchange given the parameters involved. I was directed to the medium bore Sweetwater glass bonded silica diffusers I used. They are machined from a solid block. They do become stained in this application but I have not had any troubles with them plugging. They are warrantied for 2 years (some restrictions) and can be cleaned with muriatic acid. We have not had to do so after using them for 3 years but do dip them in hydrogen peroxide 3% occasionally to be on the safe side. They are breakable if dropped on a hard surface. I broke one dropped from 4 feet onto concrete. There are two included with each Microbulator 50, a 12 inch one and 3 X 1 X 1 inch one which inserts into my ‘magic’ fitting/chamber inside the pipe.

PVC Slotted Diffusers:

Each brewer will, as of April, 2008, include additionally, 2 PVC diffusers which I have designed. Testing is still ongoing but initial tests indicate a good likelihood that the PVC diffusers may eventually replace the glass bonded diffusers. We are including them for brewer owners to try out. Not that there is anything wrong with the glass bonded diffusers but when they require cleaning a harsh chemical is employed and I feel somewhat guilty selling a product with parts which must be cleaned with muriatic acid which is bad for the environment.

The reason for not coming up with this diffuser design sooner is that I just recently discovered a method for cutting such narrow 254 micron slots. There are 2 sizes of  PVC diffuser, a ¾ inch diameter diffuser for internal use and a 1 ½ inch diameter diffuser for use in the body of water or inside the mesh extractor. The pipe is perforated with precision cut slots at specified ½  inch increments ( ¼  inch increments for the ¾ inch diffuser). We have used a length which maximizes flow and DO2 with the pump and volume of water.

Tests using these PVC diffusers together, showed the dissolved oxygen (DO2) was maintained at only 1 PPM less than trials using the two glass bonded diffusers. (Glass bonded 11.6 PPM; PVC slotted 10.6 PPM in water; 65F). Tests also showed that the large PVC diffuser was as effective to better than the glass bonded diffuser when used in the mesh extractor.

Barrel: I searched high and low in Canada for a translucent barrel with straight sides and a removable top. I could only find them in the USA and the price to buy and import them puts my Microbulator 50 selling price much higher. I wished to have a translucent color (white in appearance) barrel to potentially encourage the growth of phototrophic microbes. I am of the opinion that they play an important role in the microbial nutrient cycle. Anyway the translucent barrels I did find, had to have the tops cut off and rough surfaces sanded but they are inexpensive. The cut off lids are wired and taped back on for shipping. For those potential purchasers who do not believe in my theory, I can provide blue barrels with factory made removable lids for about $10 more.  If there is enough interest in the USA barrels I will get them in but it will add about $100 to the price.

Extractor; The extractor bag we are using is 400 microns mesh size, 24 inches long and 7 inches in diameter. There is a stainless steel supportive ring sewn into the top and a rubberized poly cap, with an entry hole for the down pipe or diffuser. The unit is hung over the PVC pipe with nylon line.  Replacement bags will be around twelve bucks. I tested many sizes of mesh prior to choosing 400 microns. I tried 200, 250, 300, 400, 800, 1000 microns mesh sizes.

Bungee Cord; A rubber bungee cord is included which holds the unit in place and prevents floating, as it is filled with air charged water. The hooks are the perfect size to secure the positioning of the control valve and large diffuser. This beats trying to use weights inside the tank.
 
How about cleaning?

The whole unit can be dismantled and cleaned in under twenty minutes. The unit should be removed from the compost tea while still pumping air for best results. This prevents back-flow into the pores of the diffusers and into the air tubing. While they are pumping air, particles and bacteria will have a more difficult time entering the bore holes. The whole unit then pulls apart and can be cleaned quickly with fresh water, a scrub brush or pad and a bottle/pipe cleaner (available at Wal Mart, etc.) If you clean the unit right after use, generally you can use water alone but occasionally you may wish to use hydrogen peroxide or bleach. It is not advised to use bleach on the diffusers but you may use it on the pipe and tubing. You should not need to clean the inside of the air tubing if you prevent back-flow. The extractor bag should be flushed under fresh water immediately following use and can be hand washed (or gentle cycle in washer??) with detergent (please rinse thoroughly).

What about brew times?

I am confident that the Microbulator 50 will match or surpass any other commercial brewer as far as production of numbers and diversity of microbes and DO2 maintenance, given equal parameters of water, temperature, compost,  foodstock and time. If you wish to brew for 24 hours, the Microbulator will perform appropriately to extract and multiply the expected microbial types and numbers for that brew time. I recommend a brew time of around 44 hours if you are striving for a functional consortia of nutrient cycling microbes, consisting of bacteria/archaea, fungal hyphae and flagellates and/or amoebae. It is very important to be aware that you need good quality compost/vermicompost and feedstock to get good quality compost tea. Temperature and water quality must also be considered. Really!; there can be so many variables and the best way to know at what hour your microbes are at the optimum level is by microscopic examination. I’m working towards including a cheap microscope with each brewer but I must make some money first to buy a bunch of cheap scopes to evaluate and tweak.

Please see the video clips below for data from different brew times.

What are some other benefits of purchasing a Microbulator 50?

All Microbulator 50 owners will have access to my recipes for brewing compost tea for various purposes. If improvements are discovered applicable to this model the owners will receive the new parts free of charge. Support will be provided by email and telephone. Owners will be privy to new information gained through my ongoing research concerning, technique, application, disease suppression, microbial activity and recipe development. When I find and start distributing a simple microscope, Microbulator 50 owners will receive a discounted price of purchase. Through the distribution of the little microscope with interface to computer I am hoping to set up a research network of sorts with individuals from different areas, using different compost and having various growing circumstances. The idea is to gather and share direct view microbial data by way of micro-photographs and video.

Do you have different sized brewers or design custom brewers?

I am working on a smaller sized brewer design applicable to the homeowner. It will likely be around 10 gallons in size. My design principle can be applied to pretty much any size of brewer. I use the same operational principle for our 1200 US gallon brewer which we use on our farm. The right sized air pump, diffusers, pipe, etc. must be calculated in accordance to the CFM per volume/depth of water.

I am open to customizing designs for large on farm applications and to manufacturing ‘pretty brewers’ with stainless steel pipe, tanks and extractors. Just drop me an email if this interests you.

Purchase & Shipping

I presently am limited to receiving payment by Paypal or bank transfer. Paypal allows payment by credit card or through your bank. I believe this service is still free. If you wish to arrange  a purchase please email me at thegoodjob@hotmail.com 
Note: My Paypal account is not associated with this email address.

Units which include the barrel must be shipped by a trucking company or via Greyhound express. I am sure Greyhound is much less expensive. The entire unit can be packaged securely inside the drum.
Units shipped without the tank can likely go by mail or courier. In any case the choice is the purchaser’s. I’ll try to post some costs next week.
 
Where is your data?

I’m a great believer in pictures as documentation and exhibition so I have posted some video clips here which show the Microbulator 50 in operation and some microscopic videos recording the microbes extracted and grown at several different brew times. I will be adding additional video clips shortly, including the cleaning of the brewer and the 1200 US gallon brewer in operation. The videos are viewed using Windows Media Player which comes with most PC operating systems. You need to download them to watch and it may take some time based on your computer and Internet connection. In many cases I have offered a choice of high or low resolution clips. Obviously if you have a very slow connection choose the smaller file.

Video Clips
In Operation;
The Microbulator 50 demo video; 12 MB  or a smaller version at 5 MB 

Microbes;

Video Data for The Microbulator 50; April, 2008

Without The Extractor - Free Suspension Configuration;
The following video clips were shot to record microbial extraction and multiplication at varying time periods of a brew while using the Microbulator 50 in the free suspension configuration, that is with 4.5 liters of vermicompost and solid feedstock added directly to the water without the use of the extractor. Our own vermicompost was used which was fed a base of very old cow manure/wood shavings compost, sphagnum peat moss and kitchen scraps. Both brews were started at a temperature of around 18 C (65F). In the first brew the vermicompost was not mixed with anything to activate it. For the second brew the vermicompost was mixed with oat flour 20:1 and covered for around 120 hours prior to using it. Both brews maintained great DO2 levels to 60 hours; Brew #1 – 9.0 PPM DO2; Brew #2 – 8.9 PPM DO2. 
I do not recommend brewing for 60 hours and longer unless you have the instruments to check your brew or unless circumstances dictate the necessity. I have however included video footage recorded at this time period.

I am very pleased with the results demonstrated by the brewer as well as our by vermicompost. The following video clips are narrated and fairly self explanatory.

Microbial Identification:

In one instance I refer to an amoeba as naked, although I’m not entirely sure whether it has a shell (test) or not. I am researching to identify it. You will see some flagellates which are joined together like a bunch of balloons. These may be Choanoflagellida Salpingoecidae (diploeca) or Kinetoplastida Bodonidae Cephalothamnium cyclopum or of a related group within the major Mastigophora group.

NOTE RE VIDEOS; If you are unable to view the videos and have a Windows operating system, you may need to initiate, dowload or update Windows Media Player.

Please click the links below to download video clips. In most cases there is a choice of a large higher resolution file followed by a smaller lower resolution file.

Brew #1 Vermicompost Free Suspension; Not mixed with Oat Flour; 
10 hours 6.5 MB
     or      2.8 MB                                      
18 hours clip 1; 10 MB  or  4.4 MB     
18 hours clip 2; 7.3 MB  or   3.2 MB       
18 hours clip 3; 5 MB                       

36 hours 9.5 MB  or  4.2 MB                                                                                                                        

42 hours 7 MB  or    3.1 MB                           

60 hours 12 MB  (large)  or   5.2 MB                                 

Brew #2 Vermicompost Free Suspension; Mixed with Oat Flour
10 hours 5 MB                                                                                        

18&36 hours 6 MB

42 hours clip 1;  7.5 MB
          or            3.3 MB                                      
42 hours clip 2; 5.9 MB   

60 hours  6.2 MB                       

With The Extractor;
The video clips below illustrate the microbial densities at various time periods in a compost tea using the Microbulator 50 configured with the mesh extractor bag in place. In this configuration the large PVC diffuser was placed inside the mesh extractor while the return nozzle still splashed oxygenated water/tea onto/into the surface. Both brews included the use of our vermicompost which had been mixed 20:1 with oat flour and covered for about 120 hours prior to use. The video clips are narrated as before.

Brew #1 was made using our vermicompost with fish hydrolysate and kelp added.
DO2 at 60 hours - 8.9 PPM

10 hours  4 MB
18 hours  5 MB
36 hours  8 MB  or  4 MB
42&60 hours  5 MB

Brew #2 was made using our vermicompost with fish hydrolysate, kelp meal and black strap molasses. Adding the molasses was kind of an impulsive afterthought and for a regular brew I probably would not repeat this when also using fish when the compost has been treated with (fed) oat flour. There was an over abundance of feedstock resulting in a very high bacteria/archaea population. The result was a brew which took 60 hours to consume the feedstock and complete. It was interesting though and definitely microbially rich. DO2 at 60 hours – 7.3 PPM

10 hours  10 MB  or  5 MB
18&36&42 hours  9 MB  or  4 MB
60 hours  7 MB  or  4 MB  

Other Batches with different Compost; 2007

Compost tea batch #1 at 22 to 24 hour brew time; 11 MB (high res); 5 MB (low res)
                                      at 44 hours; 4 MB
Compost tea batch #2 at 46 hours; clip 1; 8 MB (high res); 4 MB (low res)
                                                           Clip 2; 5 MB (med res)
                                                           Clip 3; 8 MB (high res); 4 MB (low res)
                                                           Clip 4; 10 MB (high res); 5 MB (low res)     


Tests, Observations & Postulations

Subcontents:

A look; Sphagnum Peat & Alaska Magic
Do Microbes Survive Impeller Pumps?
Yelm Brewer Trials and Lab Tests
Terracycle Plant Food Examination

 
Canadian Sphagnum Peat Moss & Alaska Magic (Humus);

Here is a look at a sample of Canadian Sphagnum peat moss Premier brand and a sample of Alaska Magic which is purported to be humus from Alaska. Both were purchased in Washington State and I examined them in a temporary lab situation using my portable microscope and laptop computer. In the first set of video clips we see the samples hydrated with distilled water and spread out on a microscope slide to have a look at the leaf and cell structure. In the narration for the Sphagnum peat moss I mistakenly describe it as 20X magnification (I meant the 20X objective) when it is actually 250X plus the camera lens effect. You can see that the two plant substances appear virtually identical which leads me to hypothesize that, although they may come from different geographical locations, they are both primarily composed of the same matter. I can provide lengthier and more inclusive video clips to interested parties. I do apologize for the variance in volume on the video clips. Please note that they may take some time to download to your computer and they play in Windows Media Player.

Click here (9.46 MB) to view the Canadian Sphagnum peat moss sample or here (4.15 MB) for a smaller version.
Click here (7.52 MB) to view the Alaska Magic sample.

In the second set of video clips we see footage of samples of Sphagnum peat moss and Alaska Magic mixed with distilled water and a couple of drops of black strap molasses to ‘wake up’ the organisms and left to sit. The Sphagnum footage was captured at 42 hours and the Alaska Magic at 24 and 60 hours. I apologize that I was not available for the other time periods for the Sphagnum. Now that I know that Premier brand Canadian Sphagnum peat moss is no different in the USA than in Canada I can run more extensive tests in my home laboratory. I brought a bag of Alaska Magic home with me. In the video clips we can see that both substances are emergent with a goodly amount of microbial life, as is to be expected with Sphagnum peat moss in my experience. There are people, purported to be experts in horticulture who report Sphagnum peat moss to be void of microbes. I believe the Dirt Doctor used the phrase ‘dead as cutters nuts’ whatever that means. I believe the evidence I have produced here speaks for itself and I believe growers could consider Canadian Sphagnum peat moss (Premier brand anyway) as a less expensive alternative to boost microbial life in certain circumstances, such as aerated Compost Tea. I have confirmation from an expert that the plant matter I have identified in Alaska Magic is in fact Sphagnum peat moss. My observations indicate that this is a what Alaska Magic primarily consists of.

Click here (8 MB) to view part A and here (8 MB) for part B of  the 42 hour ‘fed’ Sphagnum peat moss sample or click here (6.55 MB) for a smaller slightly different version
Click here (2.56 MB) to view the 24 hour ‘fed’ Alaska Magic sample
Click here (4.40 MB) to view the 60 hour ‘fed’ Alaska Magic sample

If you have suggestions for further tests which I might run please email me.

Does Microbial Life Survive Pump Impellers?

2007 Test With 1200 gallon (US) Brewer;
We made an attempt to run a test to record the effects on microbial life when distributing Compost Tea (CT) through an impeller pump, irrigation lines, shrub head sprinklers and a cheap hand operated sprayer. One objective was to grow fungal hyphae in the CT to see how it tolerated the impeller pump and sprinklers but we failed to do so. We did see the growth of bacterial structures which are about the same volume as fungal hyphae (roughly speaking) so we decided to proceed using the bacterial structures as pretend fungal hyphae to get some estimate of how fungal hyphae might survive the ride.

The pump we used is an impeller irrigation pump; 2 horse power; 20 PSI; 65 gallons per minute.
Our water line is 1.25 inches reducing to 3/4 inch. The strainer baskets
on our overhead shrub head sprinklers are about 500 to 600 microns
(just guessing; may be larger). These sprinklers create a fine mist
and are great for coating leaves.

Besides the preliminary 27hr sample I looked at and recorded 4 sample types;

The video clips presented are comprised of the best of quite a number of clips recorded.
 
1/ Sample from 1200 US gallon brewer; low active bacteria; very high
immobile bacterial 'biomass' (very large bacterial complexes); high
numbers & diversity flagellates click here to view video (9 MB)

2/ Sample through pump and water line: could see the effects of the
impeller pump as some of the bacterial structures were broken or
malformed but many remained intact. Flagellates were about the same;
Click here to view video(5 MB)

3/ Sample through pump, water line and shrub head sprinklers: about the
same effects as through the water line except the flagellate
activity seemed down a little. Click here to view video (4 MB)

4/ Sample taken right from brewer and sprayed through one of those hand
operated spray bottles set on mist; this, surprisingly had the most
devastating effects. The bacterial structures were mostly torn up
and many flagellates were killed. Click here to view video (6 MB)

I'm going to need to do a repeat trial but my thought is that if you have
hyphae that break up in the application process, unless they are
mashed, they will likely continue to grow in the soil if the
conditions support them. The same can probably be said for spores which are put off by hyphae grown.

Repeat Trial: 2008

Using the Microbulator 50 rather than the 1200 gallon brewer as previously attempted, I brewed an ACT heavily populated with fungal hyphae, utilizing our fungal inhabited vermicompost fed with oat flour.

I have succeeded with a 10 hour brew which was very heavily populated with fungal hyphae. I have demonstrated/observed that fungal hyphae complexes survive intact after passing through 1/ a mesh strainer of approximately 800 to 1000 microns, 2/ a low pressure impeller pump, 3/ a sprinkler strainer basket and 4/ a shrub head sprinkler (all one pass).

The fungal hyphae complexes averaged 3 microns in diameter ranging to 6+ microns and some which survived the pump and sprinkler spanned several 250X fields of view. I used a cheap ancient sump pump to run the test.

I think you can rest assured that a low pressure impeller pump will not significantly damage biology in compost tea.

I have recorded my data to video via microscope/computer interface and the video is available here for download (plays with Windows Media Player) > 6 MB


Rambling Dissertation on Yelm Field Trials for Brewer Prototype

Only read this if you are ready for a lengthy rambling dissertation. I begin with my excursion to the Yelm Earthworm farm for a field trial of my brewer design but diverge into laboratory techniques and their foundations.

I traveled to Yelm, Washington in July, 2007 to visit the Yelm Earthworm and Castings Farm and do a field trial of my brewer design at a location close enough to get a fresh sample to the SFI labs at Corvallis, Oregon.

At Yelm;            
The first thing I did before setting up the brewers was to check the DO2, temperature and the TDS/EC (totally dissolved salts {solids}/electrical conductivity) of their well water. The DO2 (dissolved oxygen) was 6.8 ppm, somewhat lower than ours at around 9 ppm. Challenge number one. Challenge number two came in a TDS reading of 93 ppm. You may recall my report that our water usually reads around 21 ppm. This does not mean there is something wrong with their water. It probably is high in mineral content but it does mean the capacity to sustain DO2 is diminished somewhat. The temperature of their water comes out of the ground at 65* F (Note; * = degrees). I was mulling over in my mind how to alter the compost and foodstock ratios to accommodate these readings when the largest challenge yet, presented itself in the form of the barrels which they had for me to use. They were very tall and almost football shaped with the points cut off. I had no idea that plastic 55 gallon barrels came in different shapes. Because my device has a base shape which must sit on the bottom of the barrel and has an air tube plugged into it at the bottom, the pressure applied to the stiff tubing and the restricted surface area made for a poorly balanced situation. At home we use a weight, which is a ‘U’ shaped PVC structure filled with gravel to hold down the device; once there is air flowing through it, it wants to float. Well, I don’t know if water has variant buoyancy properties at different elevations but the water at Yelm seemed to buoy the device despite the weight. We had to put rocks in ziplock bags which we balanced on the return pipe of the device to hold it down. I already knew at this point that I was going to have to market the device with a tank or give strict measurements and instructions to those wishing to get and adapt their own tanks. I also realized the weight idea is a no go and would need to secure the device with a strap across the tank. I thought about scrapping the trial at that point but talked myself into persisting since I had traveled so far and the SFI lab was only 4 hours south.

I was wishing I had stuffed one more thing in the little Montana van, my white barrel. I’m sure I already had looked suspicious enough at the border crossing stocked with microscope, two weird looking cameras, empty pill bottles for test tubes, rubber gloves, vials filled with dark liquid, strangely configured PVC pipe, tubing connected to brass valves, ziplocks of compost in coolers and a beard and messy hair to boot. A 55 gallon barrel may have pushed it over the edge. Thank goodness for my USA passport. Without it I would never have made it.

Well we set up two barrels in preparation for brewing. Brew ‘A’ would use the Yelm Earthworm farm vermicompost/thermophilic compost blend and Brew ‘B’ would use my horsemanure/shavings vermicompost. Our compost normally presents a good quantity and quality of fungal hyphae in a Compost Tea (CT) and a high number of bacteria with flagellates at varying blooms throughout the brew. After getting things pretty much balanced and running the brewers for a few hours without ingredients, the DO2 was up to 9.5 ppm. Because of the high TDS readings I decided to reduce the compost used from 4% to 3% or 4.5 liters (18 cups) and the black strap molasses to 0.65%, the kelp meal I left at 0.25% but reduced the fish hydrolisate to 0.05% (which had got quite smelly at this point). I added the ingredients and we were off and running. It was around this time that we heard through the news that a heat wave was on its way. You know; the one which broke all the records in the North West. I thought to myself; ‘Of course, Murphy’s Law’.

At the Yelm Earthworm farm they are open from 8:30 AM to 5 PM and keep the big front gate locked when closed so there was no way to check on the progress of the brews in the ‘off’ hours. When I drove in the following morning and checked the brews ‘B’ device had tipped over and was not operating in correct fashion. I straightened it up and checked the DO2 at 3.9 ppm. Damn! Of course it had to be the brew with my compost. The ‘A’ brew was okay at 7.7 ppm. This was at the 21 hour mark, three hours away from drawing my first sample. The ‘A’ sample at 24 hours was still maintaining at 7.7 ppm DO2 and 72* F when I drew it. Through the microscope tube it exhibited a good amount of active bacteria at about 5% with about 7 to 8% total bacteria. I was disappointed that there was still some fish smell present. (maybe my fish was too old) Generally the CT was as I expected at this stage prior to the protozoa explosion. To see a short video of A24 click here (5 MB). The ‘B’ sample had crept back up to 5.2 ppm DO2. The temperature for both brews was 72*F. Through the microscope tube B24 presented with a good quantity of active bacteria at about 3 to 4% and very thick total bacteria at about 20 to 30%. There is some fungal hyphae present albeit of a smaller diameter than we normally see from this compost and quite coated with bacteria. I attributed this to the mishap with the device tipping but the other variables could also be at play. I only saw 1 lonely flagellate representing the protozoa population. To see B24 click here (14 MB) or here (6 MB). As usual these clips are viewed in Windows Media and may take a while to download.
Note; In the narration for b24 I use the word ‘mature’ for fungal hyphae when I mean more developed.

By this time the heat wave had hit full blast and the little room where I had set up my temporary lab became a torturous sweat box in the afternoon. This is where I was set up to examine the Alaska Magic, Sphagnum peat moss and various other substances people were bringing me to look at. I became very appreciative of the drive back to the motel at 5 PM with the windows wide open until the A/C kicked in.

The next morning the hour had arrived, or rather the 44th hour when I had decided to draw the final samples and head to the SFI lab at Corvallis. I drew the samples and had a microscopic look at them, recording the data to the computer under the witnessing eye of Kelan, one of the farm owners. My goal, primarily was to create a CT optimum for nutrient cycling in the soil. Brew ‘A44’ appeared excellent for this purpose. The DO2 was at 7.0 ppm despite the temperature being slightly over 74*F. Looking through the microscope I conservatively counted 90 flagellates per 250X field of view and as is to be expected, the number of active bacteria was radically reduced to less than 1% by the protozoa but the total bacterial level was still good at about 5%. I did not however see any amoebae. When you view the short video clip of A44 by clicking here (7 MB) bear in mind that the camera only shows about 1/3rd  of a field of view. The ‘B44’ sample was the same temperature 74*F+ but the DO2 had never recovered and remained under 5.0 ppm. Through the microscope tube B44 exhibited a tiny bit of fungal hyphae but this was a really brief exam so there could easily have been more, there was less than 1% active bacteria but very high inactive bacterial biomass for a total of around 12 to 15%; there were about 2 flagellates per 250X field; quite low. Click here to view B44 (10 MB).

I re-examined the 24 hour samples as well to decide what all I would include to get tested at SFI. The A24 sample appeared to have degraded and there was not much bacterial activity so I decided to save some money and exclude it. In reality the only really good sample for my purposes was A44 but I wanted to see what the SFI report would say concerning the fungal hyphae in B24 and B44 so I loaded the 3 samples into a small cooler and hit the road.

As, I have relayed previously I had a telephone conversation with Elaine Ingham about 10 days prior where I understood that I would be able to have a quick look at one sample using one of their scopes just to see how the flagellates had survived the 4 hour transport. In the same conversation I had understood her to say that the plate culture method was not used for counting protozoa in Compost Tea samples, contrary to what the lab manager had told me. Rather, they use the direct count or direct determination to ascertain quantities of all organisms in Compost Tea samples. When I arrived at the lab I kinda expected to go in with the samples and watch the technician put the sample on the slide, have a peek, explain to her my reason for submitting the ‘B’ samples and head back to Yelm. I had witnessed this done for someone else several years ago when I spent a day in the SFI lab. I was told to wait for the technician. After about a half hour+ I was beckoned into the lab by the tech and there was a slide prepared and on a microscope set up for incident light fluorescence, what one uses for observing stained or autofluorescing organisms. At first I glanced down the eyepiece but then asked if there was not a scope I could use with transmitted light to observe the survival and activity of the protozoa. The tech replied “What!?”. (I’m not sure which part she did not understand or if she was just startled.) She then said the protozoa would not be observable for 5 days as they were being plated out. I replied ‘That’s silly, I observed around 100 active flagellates per 250X field a few hours ago. They don't need plating.’  I wish I had not blurted out ‘silly’ but the heat of the moment and mounting disappointment was overwhelming me. The technician suggested I speak to the lab manager. I did spend a few fruitless moments engaged in conversation with the manager trying to ratify what Elaine had told me. He determined that I had misunderstood Elaine, which I guess is correct and that all Compost Tea samples are plate cultured to count protozoa. I blurted out, again, that such a count is not valid. He rightfully corrected me that, in my opinion it is not valid and I corrected my statement to reflect this meaning.

I left the lab feeling rather frustrated and confused but, despite having spent almost $400 on testing methods different than anticipated I held out hope that in the big picture the learning experience would be worth the price paid. The rush hour traffic through Portland was ugly.

The next morning at the Yelm Earthworm farm I relayed my experience and predicted that the utilization of the plate culture method would show the CT which is high in protozoa content as being lower because the CT had already produced protozoa to the optimum and many of the resting cysts had already excysted (hatched). The CT sample which is low in protozoa content would likely show a higher count after being plate cultured because there is more potential for protozoa multiplication as they have yet to populate to an optimum level and there may be resting cysts yet to excyst.

Upon returning home I contacted some people knowledgeable in microbiology and several laboratories to try to get their take on this method for counting protozoa. I could find none that thought the plate culture method made any sense for counting protozoa and one lab concurred with my prediction theory. There were also suggestions that the plate culture medium may not grow the same set of protozoa present in the CT as is. The consensus was that if they were asked to do a count of protozoa in such a medium (CT) they would immediately prepare several slides, do a live count and calculate an average. Most suggested they would use a hemacytometer or other counting chamber (slides with pockets and etchings of precise dimensions for counting microorganisms).

I thought something is not right here. Maybe I’m missing something. I had always agreed with Elaine Ingham’s assertion that the way to get a more accurate estimation of live microbes was through direct determination and that plate culturing was unreliable because it misses most of the organisms and because it projects the growth rather than showing what is present now. I have admired her stance on this amidst criticism but now, apparently her lab is using this very method for protozoa counts, while other labs are advocating direct determination. Does it make sense to use direct determination for one set of microorganisms while plating out another?

The following excerpts are from Elaine Ingham or are associated with her; I wish to make it clear that I intend no enmity towards Elaine. I hold her in high regard. Her knowledge level eclipses mine. Her contribution to the advancement and widespread practice of microbial based horticultural practices is without measure. I seek only clarity and verity.

1/ SFI Website
http://www.soilfoodweb.com/03_about_us/approach_pgs/c_01_understand_why.html
Species diversity
Species diversity is the same in compost and the tea made from that compost. Species diversity in compost is higher than fumigated or sick soil. But at least one plate count microbiology lab is giving out data suggesting that compost has lower diversity than bad soil and that “ok” tea has less diversity than bad compost. It is clear that plate count “diversity” methods are not effective in assessing species diversity, or species richness, in soil, compost or compost tea. Molecular methods tell us that species diversity in soil, tea, and compost, can number in the thousands and tens of thousands per gram.
Use of methods that tell you that soil contains only a few 5 to 10 species, or that compost contains only 8 to 15 species need to be viewed with a great deal of incredulity. Plate methods are missing only about 99.9% of what is actually present!
Do plate counts or direct counts assess tea quality? The clear answer is that direct counts assess tea quality, while plate counts do not. Take a look at the results (below) from a test where two different teas were used to control blight on tomato plants.

2/ Soil Foodweb Institute Australia
http://www.soilfoodweb.com.au/index.php?pageid=340
Plate methods could not differentiate between the two teas.
TSA incubated at room temperature, in aerobic conditions, measures “aerobic heterotrophs”. There was no detectable difference between the two teas using plate methods, despite the fact that Tea Two was capable of suppressing blight, while Tea One, sprayed at the same concentration, in the same conditions, did not suppress disease.
King’s B medium selects for pseudomonads, but not all these bacterial species are beneficial to plants. Enumeration indicated that there were more pseudomonads in the not-suppressive tea. Plate methods cannot distinguish whether the bacteria growing on this plate, and thus presumably pseudomonads, will be beneficial to the plant. If these values were used to measure “species richness-diversity”, the not-suppressive tea would get a higher “index” score than the tea that resulted in the plants remaining alive and producing a bumper crop of tomato later in the year.
Please note that “species richness-diversity” is not a valid name for any ecologically accepted measure of diversity. The lab that developed and uses this index will NOT explain how this index is calculated, and will not show any data that documents what relationship the index has with plant health. They claim the index is in any introductory textbook, but in fact, no textbook anywhere has a measure called species richness-diversity. Until such time as the lab using this index documents the claim that a higher index value actually means a benefit to the plant, the use of this index must remain highly questionable.
Spore-formers are determined by boiling the material in question to kill vegetative cells, followed by plating the material on TSA. Only spores or highly dormant stages of organisms survive boiling. Those spores capable of growing on TSA, at room temperature, in the particular oxygen conditions present in the plate (please recognize that oxygen exchange is reduced by the fact that the plates are covered), are then enumerated. Again, the not-suppressive tea had higher plate enumeration values. What is the relationship between what will grow on a plate, and physiological functions occurring in the soil, or on plant surfaces? These data show that there is no relationship.
Direct determinations separate bacteria from fungi. Plate media do not separate even bacteria from fungi, much less not giving an indication of what is going on with approximately 99.9% of the species present in the material plated.
Direct determinations also let you know whether protozoa or nematodes are present and performing their functions. A much clearer picture of what biology is present and performing their functions is possible when using direct determinations. Direct methods let you know if coverage on leaf surfaces is adequate. These types of assessments need to have a clear relation back to benefit to the plant.
Please note that there is no consistent relationship between plate count enumerations of “species richness-diversity” and improvement in plant growth. Plate counts do not assess diversity or activity of the organisms in the test material. An insignificant number of the actual total individuals or total species present in a sample grow on any single plate medium or set of lab conditions that it is difficult to see why anyone would continue to pretend that there is a relationship between plant growth and plate count assessments of diversity.

 
3/ Discussion Forum
http://lists.ifas.ufl.edu/cgi-bin/wa.exe?A2=ind0211&L=sanet-mg&P=7967
When you talk about functional groups in the soil, it is as if you think that organisms that grow on plate as active in the soil. They are not. Thus, as a method to assess function, plate counts are pitiful. As a method to determine whether a functional group exist in soil, again, plate counts are pitiful, because 99% of the individuals that might be able to perform a function do not grow on that plate.

If you want to know function, do any enzyme test. Then you know how much of that function is being performed right now. But enzyme analysis doesn't help you to know how much that function will be maintained. You can be predictive only if you know the number of active organisms performing that function now, and in ten minutes, and in an hour, etc. Plate counts don't allow you to do that. Most of the organisms that grow on any plate are dormant forms, spores, that were not active in the soil, or compost, or tea.

4/ Internet
http://www.energybulletin.net/23428.html
Monitoring the soil life
The first step in restoring the soil biology is being able to diagnose it. Since we can't look at the soil food web directly, we must rely on indirect methods. Some have suggested nematodes and springtails as indicators of soil health.
Ingham advocates a "direct count" method, in which individual organisms in a sample are counted under a microscope. Following a protocol, a trained technician counts the number of different classes of organisms (bacteria, fungi and protozoa, for example). The result is a report on the organisms estimated to be in the sample. The numbers indicate possible problems in the soil. For example, a high number of ciliates (a group of protozoa) suggests anaerobic conditions - harmful to plant life.
Other researchers have used plate counts. A soil sample is placed in a growth medium like agar, typically in a Petri dish. The number of bacterial or fungal colonies that grow from a soil sample are then counted.
Ingham maintains that this method grossly underestimates the number and variety of soil organisms. She says that the method was designed to detect and grow human disease organisms such as E. coli. In contrast, soil organisms need different conditions than the laboratory setting and growth media can provide. Only about .01 percent of soil organisms can be detected with traditional plate counts, she estimates.

5/ Discussion Forum
http://lists.ibiblio.org/pipermail/compostteas/Week-of-Mon-20020506/000000.html
Testing tea is critical - and you have to know whether the competitive organisms in the tea are ACTIVE or not. You cannot measure active organisms using plate counts, you can only measure viable organisms. There's a huge difference.

6/ Internet
http://soilfoodweb.ca/SFC-Elaine&TedArticle.pdf
To get this information, you will need to send samples of soil, compost and compost
tea to a laboratory that can provide this information. Choosing the ‘right’ lab is
important as not all soil and microbiology labs use protocols that can provide the
information that growers need to make good decisions about soil biology
management. To date peer reviewed, direct look protocols and composite databases
are only available at the worldwide soil foodweb labs in the USA, Canada, Australia,New Zealand South Africa and soon England and Belgium. Plate culture laboratory protocols cannot provide this information and miss 95% of the biology in soil because most soil organisms cannot be grown in an artificial lab environment.


7/ In The Compost Tea Brewing Manual 4th Edition, Elaine advocates direct count methods for determination of the microbes present in compost teas.

                                      End of Excerpts:

SFI Test Results:

The SFI test results did come by email. You may view the tests here in PDF format   A44   B24   B44  

A44 – When we examine the results of bacterial count overall my estimations as to general quantity (quality) from above (active bac low <1% but total okay 5%) seem to roughly concur with the SFI results (active bac. low; total bac. good). SFI reports the bacterial content in mass per volume (ug/ml) so it is difficult to make a direct comparison. I will discuss this later.

When we come to the flagellate count the SFI number is 13,863 per g (or per ml because 1 ml. of water weighs 1 gram). This is where my numbers disagree sharply with the SFI report. Remember that I did a conservative count of 90 flagellates per field of view.

The formula for roughly converting numbers of microorganisms per field of view to microorganisms per ml or g is;
(~ = divided by;  field of view = FOV)
Number of microorganisms/ml = area of coverslip ~ area of FOV x number of organisms/FOV x number of pipette drops/ml
The 250X FOV of my portable microscope = .49 sq mm
The number of drops per ml. = 20
The area of the coverslips = 324 sq mm

Therefore; The number of flagellates/ml = 324 ~ .49 x 90 x 20 = 1,190,204.08/ml
Because 1 ml of water = 1 gram, this = 1,190,204 flagellates/g
This is over a million flagellates per gram. Even if my count is off by 10 percent or more this is still radically different from the SFI result. I attribute this to the plate culturing method they used.

Note that my prediction bore out; that the sample with the higher number of direct count flagellates is showing a lower number through the plate count method.  

There is a comment in the lower portion of the SFI test which states that the aerobic bacteria are dormant. I would like to know how aerobic bacteria are determined without using plating or other methods.

B24 – Here again the observations I recorded (of active bacteria at about 3 to 4% and very thick total bacteria at about 20 to 30% showing very good; mention of okay fungal hyphae) seem to generally jive with the quality description from SFI (active bac. good; total bac. excellent).  Again I cannot make a direct comparison because the bacteria are recorded in mass/volume.

On the surface it would appear that even our flagellate estimations concur were it not for the comments and the following report for B44. The comment at the bottom portion of the report states ‘Protozoa either not present in compost, or did not survive in the tea’

If we skip ahead to the SFI test result for B44, which is drawn from the identical Compost Tea brew (just 20 hours later) the number of flagellates reported is 277,259/g. In the lower portion of the report the flagellate count is described as excellent. Hold on; This is the CT where protozoa were either not present in the compost or did not survive the tea. What’s up with this? I attribute this to the potential inaccuracy of using the plate culture method to count protozoa.

Interestingly, even though the DO2 was miserably low when I drew the B24 sample there is no comment saying that the aerobic bacteria are dormant. The description makes this CT sample sound superior to A44 even though we have (to the best of our current knowledge) observed microbial activity and DO2 readings indicating the opposite. One good thing to know is that SFI measures the fungal hyphae at 4 micrometers and determines it to be beneficial. Now that’s the kind of meat and potatoes information I find useful. It backs up my estimates of 6 micrometer hyphae when everything is going right.

B44 – My numbers (less than 1% active bacteria but very high inactive bacterial biomass for a total of around 12 to 15%;) for bacteria observed seem to go along with the SFI qualitative description (active bac. low; total bac. good) except that I may have a higher total bacteria. This could be where their superior staining techniques may help define bacteria from other junk. Of course as previously outlined our flagellate counts are way different. My observation being about 2 flagellates per 250X field; quite low, translated; 324~.49x2x20= 26,530/ml = 26,530/g.  Yes that’s what I call low but much lower than the SFI; 277,259/g.

Note that my predicted theory bears out again; the sample which had the directly determined lower count of flagellates ended up showing the higher count when the plate culture method of counting was employed.

I need to question the reason for the plate culture method being used to assess protozoa numbers in CT. Generally, in my understanding, a plate culture method is useful for determining the potential for a substance to produce certain microorganisms. It is therefore useful for application to soil, compost, humus, peat samples, etc. For CT samples I’m an advocate for what you see is what you got NOT what you see is what you might get if you culture these microbes out over 5 days. I could also be missing the point completely and am therefore open to being educated.

Microbial Mass
I said that I would discuss the results for bacteria and fungal hyphae expressed in terms of mass per volume. This type of expression is used in various studies and analysis of microbes. It is deemed necessary for certain trials which have been carried out and there have been numerous approaches and formulae establishing conversion factors to interpret volume/volume of microbes as mass/volume or mass/mass.

I have searched for and read some of the research papers on which many of the accepted conversion factors are based for studies carried out by contemporary scientists. I have found the results to vary greatly and indeed even some of the authors of the papers warn that these are rough averages and one must have confidence in the methods used to formulate the presently used conversion factor for the specific group of microbes being utilized. We are talking about the weight of microorganisms here. You can’t use the bathroom scales so it is based primarily on the mass of carbon and there are many variables concerning environmental medium, growth rates, species, etc.

I have already been overly long-winded so I’ll not provide any excerpts but will be happy to email the journal articles to interested parties. I will, however list some of the conversion factors with the author(s’) name(s). I have converted them all into grams per cubic centimeter so there is some chance of misplaced decimal points. If you see any errors please let me know;
1979 – van Veen & Paul; bacteria - 0.8 g/cu cm; fungal hyphae – 0.33 g/ cu cm
1982 – Newell & Statzell-Tallman; fungal hyphae - 0.9 g dry/cu cm
1982 – Bakken & Olsen; bacteria – 1.09 g/cu cm and 30% dry matter (DM); fungal hyphae – 1.09 g/cu cm and 21% DM; I have trouble comprehending this one
1885 – Braktak;  fixated bacteria – 0.056 g/ cu cm; wild bacteria(?) - 0.22 g/cu cm
1987 – Borsheim & Braktak; bacteria – 0.22 g/cu cm 
1987 – Lee & Fuhrman; bacteria – 0.38 g/cu cm
There are other articles I could not access ($) and I’m sure there is more information available.
I asked the SFI lab in Oregon for their conversion factors and was told it is proprietary information, however Elaine told me in an email that as she recalls they are; prokaryotes (bacteria) - 0.31 g/cu cm; fungal hyphae - 0.44 g/cu cm

There is obviously value in expressing bacterial and fungal amounts like this, especially if one needs to perform calculations or express mass to mass ratios. For my information to use these results I’d like to know what the conversion factor is, what research the factor is derived from and what the high and low variances are. I have looked for this information on the SFI website and maybe it’s there but I have not seen it, nor have I found a basic description of their testing practices and techniques. At most labs they will give you this information with the exception of proprietary techniques for detection of species, etc.

The SFI test results can become confusing, otherwise. For example if we look at two of the SFI test results posted on the KIS website; One test is for their small brewer (I believe) and the Invoice # is 5795. The other test is for the vermicompost they use (Invoice 0). The tests use the same units of measure as ug/ml is the same as ug/g unless a sample has been dried (baked) first (their protocol does not state this that I know of) In the vermicompost the total bacteria is reported at 5969 ug/g while in the Compost Tea it is reported at 11648 ug/ml (ug/g). If they are using this or a similar vermicompost does this mean that the bacteria did not even double? Perhaps there is a totally different method for handling and testing the compost but without knowing this it is difficult to learn something from these results.

Using these two tests to review the validity of the plate culture method to count protozoa, in the vermicompost the flagellate count is 209,599 /g (/ml) and in the Compost Tea the flagellate count is 13,863 /ml (/g).  If they are using this or a similar vermicompost in the brewer does this mean that the numbers were reduced by the brewer? Likely this is a factor of the plate culture method. Something seems wrong with the overall picture. It could be there is something I just don’t get and I need educating.

Something I pointed out before is that the flagellate number and amoebae numbers on the KIS test are identical at 13,863/ml but something I just noticed is that the flagellate number on my A44 test is also 13,863/g (/ml). What are the chances?

1/ It would be nice if someone from SFI could lay out as much as possible what their testing protocol is. 2/ What is your biomass conversion factor and where is it derived from? 3/ Can someone explain the reason for the plate culturing of the protozoa?
4/ How do you determine that bacteria are aerobic as noted in the quantitative test results?

What did I learn? I learned that I had to return to the drawing table as far as a couple of features for the Microbulator design. I had reaffirmed the importance of what is in compost to begin with and the ability of water to retain O2. This supports the practice of blending several substances for a broader range of microbes, like done by KIS. I have come to the realization that the SFI quantitative testing is probably not going to work for my purposes of illustrating the efficacy of the brewer; unless I’m shown to be full of it and re-educated. If anything I might prefer their little qualitative test. In a discussion with the biologist at Woodsend lab she expressed what I have observed consistently. A set of microorganisms in a CT sample does not stay the same for long  making it difficult for shipping to the lab and getting reliable results. I guess I’ll stick to the video footage of microbes extracted to illustrate results for now.


Terracycle Examination:

Recently, I examined Terracycle’s product labeled, Plant Food. It comes in a recycled 591 ml pop bottle with a spray device screwed on top. It has an NPK analysis on the label of 0.03 – 0.002 – 0.02. The ingredients listed are; vermicompost extract, period. It is an OMRI listed product where it is classed as a manure tea. I believe the recommendations for its use are similar to the recommendations for compost tea in certified organic applications. According to OMRI, whom I contacted by phone, if there are other ingredients they must be listed. If there are any loopholes in labeling laws I am unaware of them. When I first heard of Terracycle’s ‘liquid worm poo’ product I assumed that they must be using phosphoric acid to stabilize or put to sleep the microbes. According to their ‘science guy’, Bill and their label, this is not the case. Bill says the stabilization and shelf life are attributed to the process utilized in production which he did not volunteer to reveal. He did say their product has been tested against pathogens such as e-coli.

I examined several samples of one bottle only so I would call this a preliminary observation and report. Upon first examination of the product fresh out of the bottle under the microscope, I observed very little microbial life. I saw two spore forming bacteria, apparently dormant. This was akin to looking at plain water. It was so vacant (boring) that I did not bother looking at another sample. Because I do so with all samples I observe, I filled a pill bottle with the liquid product, added a couple of drops of black strap molasses, shook it up for 90 seconds and left it sitting on the bench with the lid off. Obligingly at about 24 hours I sucked up a sample to observe. What a surprise! I saw a sample swimming with a wide variety of bacteria. There were also a few flagellates present and what appeared to be fungal hyphae. You can download a video clip here (14 MB) or smaller version here (6 MB).

At the 40 hour mark after the Terracycle being fed black strap molasses, I found myself further amazed to see even more diverse bacteria and a higher number and diversity of flagellates. There are large masses comprised of a type of actinomycetes or other hyphal forming bacteria (I believe) conjunctive with other stationary bacterial biomass, active bacteria, yeast formations, fungal hyphae and feeding flagellates. These appear as large islands and the video clip only shows the outer edge of one of these. The short clips I made for the website do not properly illustrate these masses so if someone is interested in seeing more I can send you some footage. The apparent fungal hyphae structures are much more developed and growing across many fields of view. They are approximately 3.5 to 4 microns in diameter and appear to have relatively regularly placed septa. I did not observe any branching and do not know what this may indicate. If someone knowledgeable in fungal hyphae has any input I’d appreciate it. The video clip for the 40 hour observation may be downloaded here (14 MB) or here (6 MB).

My response to this preliminary observation by way of recommendations is that if one uses it straight out of the bottle it will probably have little effect as a foliar feeder or leaf disease suppressant. Used straight out of the bottle on soil it may have very good benefits, via initiating or boosting the microbial nutrient cycle at the root/soil interface, once the dormant microbes are stimulated to growth and activity from propitious conditions and food sources. Used as an inoculant in a compost tea Terracycle may have profound beneficial effects to increase the microbial diversity and volume in compost tea inclusive of bacteria, flagellates and (apparently) fungal hyphae.

As I said, I am most surprised by these observations and expected absolutely the opposite. I would appreciate hearing from other microscopists out there who may look at this product in similar fashion. As time affords it, I will look at more samples (bottles) of this product to test for consistency to rule out this being an isolated case. I did run a control test on my molasses mixed with water in case anyone wonders.  

Resources & Links

Following are some links to useful resources and information. I will be adding to this periodically so keep checking in. Please let me know if you come across inactive links.

Worms;
Here is simple information I put together for keeping your own composting worms to supply your brewer with fresh vermicompost.> keepingworms.pdf
Venturi;
Here is a sketch venturisketch.pdf  and text venturitext.pdf  instructing the use of a water pump and venturi for building a compost tea brewer. It works.                                                             

Microscopes;                   
Here is a PDF copy of my Microscope advisory. It may help you with making a decision concerning a microscope purchase > microscopeadvisory.pdf